{ "schemaVersion": 1, "id": "shoulder-mri", "name": "Shoulder MRI · 3D DESS", "modality": "MRI", "species": "Human", "region": "Shoulder", "defaultSeriesId": "left-dess", "thumbnail": "thumbnail.png", "dataType": "uint16", "byteOrder": "little", "compression": "gzip", "axisOrder": "column,row,slice", "labelsDataType": "uint8", "structures": [ { "id": 1, "name": "Humerus (visible proximal portion)", "nameLatin": "Humerus", "group": "bone", "color": "#edc95d", "quizEligible": true, "description": "Draft outline of the visible proximal humerus, including its cortical boundary, within selected central slices. It is not a complete humerus segmentation.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Humerus", "clinicallyReviewed": false }, { "id": 2, "name": "Deltoid (anterior portion)", "nameLatin": "Musculus deltoideus, pars clavicularis (partial region)", "group": "muscle", "color": "#64b5ec", "quizEligible": true, "description": "Conservative draft region within the anterior deltoid. Inferior extent is deliberately limited where separation from adjacent muscles becomes uncertain; it is not an outline of the whole deltoid.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Musculus deltoideus, pars clavicularis (partial region)", "clinicallyReviewed": false }, { "id": 3, "name": "Deltoid (posterior portion)", "nameLatin": "Musculus deltoideus · pars spinalis", "group": "muscle", "color": "#7bc6b5", "quizEligible": true, "description": "Superficial posterior shoulder muscle, traced separately from the anterior portion. Visible portion only; approximate draft contours, not clinically reviewed.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Musculus deltoideus · pars spinalis", "clinicallyReviewed": false }, { "id": 4, "name": "Supraspinatus muscle", "nameLatin": "Musculus supraspinatus", "group": "muscle", "color": "#e39fae", "quizEligible": true, "description": "Rotator-cuff muscle above the glenohumeral joint and deep to the acromion. Visible portion only; approximate draft contours, not clinically reviewed.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Musculus supraspinatus", "clinicallyReviewed": false }, { "id": 5, "name": "Posterior rotator cuff (muscle group)", "nameLatin": "Musculi infraspinatus et teres minor · visible region", "group": "region", "color": "#bd9edb", "quizEligible": true, "description": "Visible posterior rotator-cuff muscle region, deep to the deltoid. Infraspinatus and teres minor are not separated from one another in this draft. Partial, approximate contours; not clinically reviewed.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Musculi infraspinatus et teres minor · visible region", "clinicallyReviewed": false }, { "id": 6, "name": "Subscapularis muscle", "nameLatin": "Musculus subscapularis", "group": "muscle", "color": "#d6aa72", "quizEligible": true, "description": "Anterior rotator-cuff muscle; the visible muscle belly is traced near the medial end of the acquisition. Visible portion only; approximate draft contours, not clinically reviewed.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Musculus subscapularis", "clinicallyReviewed": false }, { "id": 7, "name": "Triceps brachii (long head)", "nameLatin": "Musculus triceps brachii · caput longum", "group": "muscle", "color": "#db8f72", "quizEligible": true, "description": "Visible posterior upper-arm muscle belly arising below the glenoid. Visible portion only; approximate draft contours, not clinically reviewed.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Musculus triceps brachii · caput longum", "clinicallyReviewed": false }, { "id": 8, "name": "Pectoralis major (visible portion)", "nameLatin": "Musculus pectoralis major", "group": "muscle", "color": "#dfadbd", "quizEligible": true, "description": "Visible anterior chest muscle approaching its humeral attachment; much of the muscle lies outside the field of view. Visible portion only; approximate draft contours, not clinically reviewed.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Musculus pectoralis major", "clinicallyReviewed": false }, { "id": 9, "name": "Acromion and scapular spine", "nameLatin": "Acromion et spina scapulae", "group": "bone", "color": "#f0c584", "quizEligible": true, "description": "Visible bony roof of the shoulder, above the supraspinatus. Visible portion only; approximate draft contours, not clinically reviewed.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Acromion et spina scapulae", "clinicallyReviewed": false }, { "id": 10, "name": "Coracoid process", "nameLatin": "Processus coracoideus scapulae", "group": "bone", "color": "#e4d580", "quizEligible": true, "description": "Anterior hook-shaped projection of the scapula. Only the clearly delineated lateral oval is traced in this DESS series; the uncertain medial root is omitted.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Processus coracoideus scapulae", "clinicallyReviewed": false }, { "id": 11, "name": "Distal clavicle", "nameLatin": "Clavicula · extremitas acromialis", "group": "bone", "color": "#ceb477", "quizEligible": true, "description": "Visible distal clavicle near the acromioclavicular joint. Visible portion only; approximate draft contours, not clinically reviewed.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Clavicula · extremitas acromialis", "clinicallyReviewed": false }, { "id": 12, "name": "Scapula (glenoid and neck)", "nameLatin": "Scapula · cavitas glenoidalis et collum", "group": "bone", "color": "#d2bc94", "quizEligible": true, "description": "Visible medial glenoid and scapular neck near the end of the imaged joint slab. Visible portion only; approximate draft contours, not clinically reviewed.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Scapula · cavitas glenoidalis et collum", "clinicallyReviewed": false }, { "id": 13, "name": "Supraspinatus tendon (visible portion)", "nameLatin": "Tendo musculi supraspinati", "group": "tendon", "color": "#f2dca0", "quizEligible": true, "description": "Visible superior rotator-cuff tendon band; the thin boundaries are approximate. Visible portion only; approximate draft contours, not clinically reviewed.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Tendo musculi supraspinati", "clinicallyReviewed": false }, { "id": 14, "name": "Anterior upper-arm muscle group", "nameLatin": "Musculi biceps brachii et coracobrachialis · visible region", "group": "region", "color": "#91bbd5", "quizEligible": true, "description": "Visible anterior upper-arm muscle region beside the humerus. Individual biceps heads and coracobrachialis are not separated in this draft. Partial, approximate contours; not clinically reviewed.", "coverageType": "partial", "reviewStatus": "draft", "reviewed": false, "latin": "Musculi biceps brachii et coracobrachialis · visible region", "clinicallyReviewed": false } ], "annotationStatus": "14 locally drawn draft structures, covering selected visible bone, muscle and tendon portions. Coverage differs by structure and acquisition. Contours are interpolated only between explicitly traced keyframes; ambiguous overlaps remain unassigned. These are approximate drafts, not published reference masks or clinically reviewed segmentations. The atlas does not include every visible tissue. Thin cartilage, labrum, ligaments, small nerves and vessels remain unannotated. Quiz questions use traced original keyframes only.", "source": { "title": "Dynamic Glenoid", "url": "https://osf.io/2bneu/", "doi": "10.17605/osf.io/2bneu", "downloadUrl": "https://osf.io/download/s4ta5/", "contributors": [ "Tom Gale", "Clarissa LeVasseur", "William Anderst" ], "license": "No separate public dataset licence is specified. Additional publication permission was confirmed by the RadioVista site owner on 30 October 2026.", "licenseUrl": "https://github.com/CenterForOpenScience/cos.io/blob/407a9f8bc57cbb2b916e9d5bd2f63ee8ae9e0467/TERMS_OF_USE.md", "licenseHelpUrl": "https://help.osf.io/article/148-licensing", "licenseReview": "The original dataset terms remain applicable; the owner confirmation does not grant downstream users an open redistribution licence.", "attribution": "Dynamic Glenoid, OSF; acknowledge NIH-R01AR080425 as requested by the project wiki.", "wikiUrl": "https://api.osf.io/v2/wikis/3atre/content/", "processing": "Original stored pixel values retained exactly; slices sorted by physical position. Lossless little-endian uint16 gzip encoding. No resampling, smoothing, cropping, intensity scaling, or synthetic anatomy.", "cohortDescription": "The source describes healthy young adults. No individual radiological report or normality assessment is supplied for this case.", "reviewStatus": "Technical conversion checked. Individual normality and any local annotations have not been clinically reviewed.", "archiveSha256": "95d230fa125207633d296e8785919a5cec99637958a9bc9a3a801d1c84f22fb3", "archiveBytes": 74295621, "publicationPermission": { "status": "confirmed-by-site-owner", "confirmedOn": "2026-10-30", "statement": "Site owner confirms additional publication permission for this RadioVista release. No permission document was provided to this chat; this is not a new open-data licence." } }, "privacy": { "export": "Pixels and whitelisted technical metadata only. DICOM containers, patient fields, and UIDs are not included.", "visualCheck": "Sample images were checked; no burned-in identifying text was observed in those samples." }, "limitations": [ "Both acquisitions are oblique sagittal volumes with a special water-excited DESS contrast.", "The 512-pixel display matrix is finer than the 256-pixel acquisition matrix; the displayed 0.293 mm spacing is not native 0.293 mm in-plane resolution.", "The approximately 62 mm slab covers the joint region, not the complete shoulder girdle or all muscle bellies.", "Laterality is inferred from DICOM LPS coordinates and anatomy; an explicit laterality tag was not available.", "Published CT bone models have no documented transform to these MRI volumes and have not been used as MRI masks." ], "series": [ { "id": "left-dess", "name": "Left shoulder (inferred) · 3D DESS", "label": "Left shoulder (inferred) · 3D DESS", "laterality": "L", "lateralityBasis": "Inferred from DICOM LPS coordinates and visual anatomy; no explicit laterality tag.", "plane": "Oblique sagittal", "sequence": "3D water-excited DESS", "sourceSeriesNumber": 17, "volumeFile": "left-dess.uint16.gz", "labelsFile": "left-dess.labels.uint8.gz", "plannedLabelsFile": "left-dess.labels.uint8.gz", "labelsDataType": "uint8", "dataType": "uint16", "byteOrder": "little", "compression": "gzip", "axisOrder": "column,row,slice", "dimensions": [ 512, 512, 208 ], "frameCount": 208, "defaultSlice": 100, "defaultWindow": { "center": 95.5, "width": 191.0, "basis": "Whole-volume stored-value percentiles 1 and 99.5; display only." }, "pixelSpacing": [ 0.29296875, 0.29296875 ], "spacing": [ 0.29296875, 0.29296875, 0.3000000073380704 ], "sliceSpacingMm": 0.3000000073380704, "sliceThicknessMm": 0.30000001192093, "sliceCenterSpanMm": 62.10000151855169, "imageOrientationPatientLPS": [ 0.5673757339093, 0.7535439803899, 0.3320485599865, 0.1776069473377, 0.2817615674883, -0.9429030657199 ], "sliceNormalLPS": [ -0.804077452008442, 0.5939544500252385, 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